Publications
2025
Peer-reviewed journal article
Box embeddings for extending ontologies: a data-driven and interpretable approach
Memariani, Adel; Glauer, Martin; Flügel, Simon; Hastings, Janna; Mossakowski, Till; Neuhaus, Fabian
In: Journal of cheminformatics - London : BioMed Central, Bd. 17 (2025), Heft 1, Artikel 138, insges. 18 S.
When one logic is not enough - integrating first-order annotations in OWL ontologies
Flügel, Simon; Glauer, Martin; Neuhaus, Fabian; Hastings, Janna
In: Semantic web - Amsterdam : IOS Press, Bd. 16 (2025), Heft 2, Artikel SW-243440, insges. 15 S.
Non-peer-reviewed journal article
Chebifier 2 - an ensemble for chemistry
Flügel, Simon; Glauer, Martin; Hastings, Janna; Mossakowski, Till; Mungall, Christopher J.; Tumescheit, Charlotte; Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 4064 (2024), insges. 6 S. [Konferenz: 21st International Conference on Semantic Systems, SEMANTiCS 2025, Vienna, Austria, September 3-5, 2025]
2024
Book chapter
A fuzzy loss for ontology classification
Flügel, Simon; Glauer, Martin; Mossakowski, Till; Neuhaus, Fabian
In: Neural-Symbolic Learning and Reasoning , 1st ed. 2024. - Cham : Springer Nature Switzerland ; Besold, Tarek R., S. 101-118 - (Lecture notes in computer science; volume 14979) [Konferenz: 18th International Conference on Neural-Symbolic Learning and Reasoning, NeSy 2024, Barcelona, Spain, September 9-12, 2024]
Peer-reviewed journal article
Chebifier - automating semantic classification in ChEBI to accelerate data-driven discovery
Glauer, Martin; Neuhaus, Fabian; Flügel, Simone; Wosny, Marie; Mossakowski, Bis; Memariani, Adel; Schwerdt, Johannes; Hastings, Janna
In: Digital discovery - Cambridge : Royal Society of Chemistry, Bd. 3 (2024), Heft 5, S. 896-907
Interpretable ontology extension in chemistry
Glauer, Martin; Memariani, Adel; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: Semantic web - Amsterdam : IOS Press, Bd. 15 (2024), Heft 4, S. 937-958
Dissertation
Knowledge and learning - synergies between ontologies and machine learning
Glauer, Martin; Mossakowski, Till; Hastings, Janna
In: Magdeburg: Universitätsbibliothek, Dissertation Otto-von-Guericke-Universität Magdeburg, Fakultät für Informatik 2024, 1 Online-Ressource (vii, 134 Seiten, 14,94 MB) [Literaturverzeichnis: Seite 119-134][Literaturverzeichnis: Seite 119-134]
2023
Book chapter
Ontology pre-training for poison prediction
Glauer, Martin; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: KI 2023: Advances in Artificial Intelligence , 1st ed. 2023. - Cham : Springer Nature Switzerland ; Seipel, Dietmar, S. 31-45 - ( Lecture notes in computer science; volume 14236) [Konferenz: 46th German Conference on AI, Berlin, Germany, September 26-29, 2023]
Neuro-Symbolic Semantic Learning for Chemistry
Glauer, Martin; Mossakowski, Till; Neuhaus, Fabian; Memariani, Adel; Hastings, Janna
In: Compendium of Neurosymbolic Artificial Intelligence - Amsterdam : IOS Press . - 2023, S. 460-484, Artikel 21 - (Frontiers in artificial intelligence and applications; volume 369)
Peer-reviewed journal article
Predicting outcomes of smoking cessation interventions in novel scenarios using ontology-informed, interpretable machine learning
Hastings, Janna; Glauer, Martin; West, Robert; Thomas, James; Wright, Alison J.; Michie, Susan
In: Wellcome open research - London : Wellcome Trust, Bd. 8 (2023), Artikel 503, insges. 21 S.
2022
Book chapter
ESC-Rules - explainable, semantically constrained rule sets
Glauer, Martin; West, Robert; Michie, Susan; Hastings, Janna
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 3212 (2022), Artikel paper 7, insges. 10 S.
2021
Book chapter
Automated and explainable ontology extension based on deep learning - a case study in the chemical domain
Memarian, Adel; Glauer, Martin; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: DAO-XAI 2021, Data meets Applied Ontologies in Explainable AI , 2021 - [Aachen, Germany] : [RWTH Aachen] ; Confalonieri, Roberto, insges. 15 S. [Workshop: Workshop on Data meets Applied Ontologies in Explainable AI, DAO-XAI 2021, Bratislava, Slovakia, September 18 - 19, 2021]
FOWL - an OWL to FOL translator
Flügel, Simon; Kleinau, Anna; Neuhaus, Fabian; Glauer, Martin; Hastings, Janna
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 2969 (2021), insges. 8 S. [Workshop: 12th International Conference on Biomedical Ontologies, ICBO 2021, Bolzano, Italy, September 11-18, 2021]
Peer-reviewed journal article
Learning chemistry - exploring the suitability of machine learning for the task of structure-based chemical ontology classification
Hastings, Janna; Glauer, Martin; Memariani, Adel; Neuhaus, Fabian; Mossakowski, Till
In: Journal of cheminformatics - London : BioMed Central, Bd. 13 (2021), Artikel 23, insges. 20 S.
Introducing the Open Energy Ontology - enhancing data interpretation and interfacing in energy systems analysis
Booshehri, Meisam; Emele, Lukas; Flügel, Simon; Förster, Hannah; Frey, Johannes; Frey, Ulrich; Glauer, Martin; Hastings, Janna; Hofmann, Christian; Hoyer-Klick, Carsten; Hülk, Ludwig; Kleinau, Anna; Knosala, Kevin; Kotzur, Leander; Kuckertz, Patrick; Mossakowski, Till; Muschner, Christoph; Neuhaus, Fabian; Pehl, Michaja; Robinius, Martin; Sehn, Vera; Stappel, Mirjam
In: Energy and AI - Amsterdam : Elsevier ScienceDirect, Bd. 5 (2021), Artikel 100074, insges. 14 S.
2020
Peer-reviewed journal article
Identification of user requirements for an energy scenario database
Reder, Klara; Stappel, Mirjam; Hofmann, Christian; Förster, Hannah; Emele, Lukas; Hülk, Ludwig; Glauer, Martin
In: International Journal of Sustainable Energy Planning and Management - Aalborg : Univ., Bd. 25 (2020), S. 95-108
Article in conference proceedings
Conversion necessities in climate and energy system modelling
Emele, Lukas; Förster, Hannah; Glauer, Martin; Hofmann, Christian; Huelk, Ludwig; Stappel, Mirjam; Winger, Christian
In: Zenodo - Genève : CERN . - 2020, insges. 20 S.
File formats in climate and energy system modelling
Emele, Lukas; Förster, Hannah; Glauer, Martin; Hofmann, Christian; Huelk, Ludwig; Stappel, Mirjam; Winger, Christian
In: Zenodo - Genève : CERN . - 2020, insges. 13 S.
2019
Book chapter
Institutions for SQL database schemas and datasets
Glauer, Martin; Mossakowski, Till
In: Recent Trends in Algebraic Development Techniques , 1st ed. 2019 - Cham : Springer ; Fiadeiro, José Luiz, S. 67-86 - (Lecture Notes in Computer Science; volume 11563) [Workshop: 24th IFIP WG 1.3 International Workshop, WADT 2018, Egham, UK, July 2-5, 2018]
Peer-reviewed journal article
Towards fuzzy neural conceptors
Mossakowski, Till; Diaconescu, Razvan; Glauer, Martin
In: Journal of applied logics - IfCoLoG journal of logics and their applications - London : College Publications, Bd. 6 (2019), Heft 4, S. 725-744
2018
Peer-reviewed journal article
Transparency, reproducibility, and quality of energy system analyses - a process to improve scientific work
Hülk, Ludwig; Müller, Berit; Glauer, Martin; Förster, Elisa; Schachler, Birgit
In: Energy strategy reviews - Amsterdam [u.a.] : Elsevier, Bd. 22 (2018), S. 264-269
2017
Book chapter
An open database concept for open energy modeling
Glauer, Martin; Stephan, Günther; Ludwig, Huelk; Wolf-Dieter, Bunke
In: EnviroInfo 2017 , 2017 - Aachen : Shaker Verlag, S. 191 [Konferenz: 31st EnviroInfo 2017, Luxembourg, September 13th15th, 2017]
Article in conference proceedings
Institutions for database schemas and datasets
Glauer, Martin; Mossakowski, Till
In: CALCO Early Ideas 2017$a satellite workshop of CALCO 2017 - Ljubljana - 2017, S. 6:1-6:3 [Workshop: CALCO Early Ideas 2017, Ljubljana, 14-16 June 2017]
2015
Book chapter
An institution for simple UML state machines
Knapp, Alexander; Mossakowski, Till; Roggenbach, Markus; Glauer, Martin
In: Fundamental Approaches to Software Engineering / Egyed , Alexander - Berlin, Heidelberg : Springer . - 2015, S. 3-18 - (Lecture Notes in Computer Science; 9033) Kongress: FASE 18 London, UK 2015.04.11-18
Towards online detection of neural assemblies in parallel spike trains
Braune, Christian; Glauer, Martin; Kruse, Rudolf
In: 48th Hawaii International Conference on System Sciences (HICSS), 2015 - Piscataway, NJ : IEEE, S. 1503-1511