Publications
2025
Peer-reviewed journal article
Box embeddings for extending ontologies: a data-driven and interpretable approach
Memariani, Adel; Glauer, Martin; Flügel, Simon; Hastings, Janna; Mossakowski, Till; Neuhaus, Fabian
In: Journal of cheminformatics - London : BioMed Central, Bd. 17 (2025), Heft 1, Artikel 138, insges. 18 S.
When one logic is not enough - integrating first-order annotations in OWL ontologies
Flügel, Simon; Glauer, Martin; Neuhaus, Fabian; Hastings, Janna
In: Semantic web - Amsterdam : IOS Press, Bd. 16 (2025), Heft 2, Artikel SW-243440, insges. 15 S.
The mercurial top-level ontology of large language models
Köhler, Nele; Neuhaus, Fabian
In: Applied ontology - London : Sage, Bd. 20 (2025), Heft 1, S. 5-15
Non-peer-reviewed journal article
Chebifier 2 - an ensemble for chemistry
Flügel, Simon; Glauer, Martin; Hastings, Janna; Mossakowski, Till; Mungall, Christopher J.; Tumescheit, Charlotte; Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 4064 (2024), insges. 6 S. [Konferenz: 21st International Conference on Semantic Systems, SEMANTiCS 2025, Vienna, Austria, September 3-5, 2025]
Book chapter
Modelling model uncertainties ontologically
Stappel, Mirjam; Mossakowski, Till; Neuhaus, Fabian; Berendes, Sarah
In: Formal Ontology in Information Systems - Amsterdam : IOS Press, Incorporated ; Prince Sales, Tiago . - 2025, S. 269-283 - (Frontiers in artificial intelligence and applications; volume 409) [Konferenz: 15th Formal Ontology in Information Systems Conference, FOIS 2025, Catania, Italy, 10 - 12 September 2025]
Representing energy in the midlevel energy ontology (MENO)
Stappel, Mirjam; Neuhaus, Fabian
In: Formal Ontology in Information Systems - Amsterdam : IOS Press, Incorporated ; Prince Sales, Tiago . - 2025, S. 59-72 - (Frontiers in artificial intelligence and applications; volume 409) [Konferenz: 15th Formal Ontology in Information Systems Conference, FOIS 2025, Catania, Italy, 10 - 12 September 2025]
2024
Book chapter
A fuzzy loss for ontology classification
Flügel, Simon; Glauer, Martin; Mossakowski, Till; Neuhaus, Fabian
In: Neural-Symbolic Learning and Reasoning , 1st ed. 2024. - Cham : Springer Nature Switzerland ; Besold, Tarek R., S. 101-118 - (Lecture notes in computer science; volume 14979) [Konferenz: 18th International Conference on Neural-Symbolic Learning and Reasoning, NeSy 2024, Barcelona, Spain, September 9-12, 2024]
CEAR - automatic construction of a knowledge graph of chemical entities and roles from scientific literature
Langer, Stefan; Neuhaus, Fabian; Nürnberger, Andreas
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 3882 (2024), insges. 16 S. [Workshop: Joint Ontology Workshops, JOWO, Enschede, The Netherlands, July 15-19, 2024]
Peer-reviewed journal article
Chebifier - automating semantic classification in ChEBI to accelerate data-driven discovery
Glauer, Martin; Neuhaus, Fabian; Flügel, Simone; Wosny, Marie; Mossakowski, Bis; Memariani, Adel; Schwerdt, Johannes; Hastings, Janna
In: Digital discovery - Cambridge : Royal Society of Chemistry, Bd. 3 (2024), Heft 5, S. 896-907
Interpretable ontology extension in chemistry
Glauer, Martin; Memariani, Adel; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: Semantic web - Amsterdam : IOS Press, Bd. 15 (2024), Heft 4, S. 937-958
The diagrammatic image schema language (DISL)
Hedblom, Maria M.; Neuhaus, Fabian; Mossakowski, Till
In: Spatial cognition and computation - London [u.a.] : Taylor & Francis, Bd. 25 (2025), Heft 2, S. 138-175
Dissertation
Knowledge and learning - synergies between ontologies and machine learning
Glauer, Martin; Mossakowski, Till; Hastings, Janna
In: Magdeburg: Universitätsbibliothek, Dissertation Otto-von-Guericke-Universität Magdeburg, Fakultät für Informatik 2024, 1 Online-Ressource (vii, 134 Seiten, 14,94 MB) [Literaturverzeichnis: Seite 119-134][Literaturverzeichnis: Seite 119-134]
2023
Book chapter
Ontology pre-training for poison prediction
Glauer, Martin; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: KI 2023: Advances in Artificial Intelligence , 1st ed. 2023. - Cham : Springer Nature Switzerland ; Seipel, Dietmar, S. 31-45 - ( Lecture notes in computer science; volume 14236) [Konferenz: 46th German Conference on AI, Berlin, Germany, September 26-29, 2023]
Neuro-Symbolic Semantic Learning for Chemistry
Glauer, Martin; Mossakowski, Till; Neuhaus, Fabian; Memariani, Adel; Hastings, Janna
In: Compendium of Neurosymbolic Artificial Intelligence - Amsterdam : IOS Press . - 2023, S. 460-484, Artikel 21 - (Frontiers in artificial intelligence and applications; volume 369)
Using the diagrammatic image schema language for joint human-machine cognition
Mossakowski, Till; Hedblom, Maria M.; Neuhaus, Fabian; Arévalo Arboleda, Stephanie; Raake, Alexander
In: Engineering for a changing world - Ilmenau : Technische Universität Ilmenau, Department of Mechanical Engineering ; Sattler, Kai-Uwe *1968-* . - 2023, S. 1-5, Artikel 5.1.133
Peer-reviewed journal article
Predicting outcomes of smoking cessation interventions in novel scenarios using ontology-informed, interpretable machine learning
Hastings, Janna; Glauer, Martin; West, Robert; Thomas, James; Wright, Alison J.; Michie, Susan
In: Wellcome open research - London : Wellcome Trust, Bd. 8 (2023), Artikel 503, insges. 21 S.
2022
Book chapter
ESC-Rules - explainable, semantically constrained rule sets
Glauer, Martin; West, Robert; Michie, Susan; Hastings, Janna
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 3212 (2022), Artikel paper 7, insges. 10 S.
Visualising image schemas - a preliminary look at the diagrammatic image schema language (DISL)
Hedblom, Maria; Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 3140 (2022), insges. 7 S. [Tagung: Sixth Image Schema Day, Jönköping, Sweden, March 24-25th, 2022]
Peer-reviewed journal article
Ontology development is consensus creation, not (merely) representation
Neuhaus, Fabiana; Hastings, Janna
In: Applied ontology - Amsterdam : IOS Press, Bd. 17 (2022), Heft 4, S. 495-513
Scientific monograph
Formal Ontology in Information Systems - Proceedings of the Twelfth International Conference (FOIS 2021)
Neuhaus, F.; Brodaric, B.
In: [Erscheinungsort nicht ermittelbar]: IOS Press, Incorporated, 2022, 1 online resource (192 pages) - (Frontiers in Artificial Intelligence and Applications Ser.; v.344), ISBN: 978-1-64368-249-5 [Description based on publisher supplied metadata and other sources.]
2021
Book chapter
Automated and explainable ontology extension based on deep learning - a case study in the chemical domain
Memarian, Adel; Glauer, Martin; Neuhaus, Fabian; Mossakowski, Till; Hastings, Janna
In: DAO-XAI 2021, Data meets Applied Ontologies in Explainable AI , 2021 - [Aachen, Germany] : [RWTH Aachen] ; Confalonieri, Roberto, insges. 15 S. [Workshop: Workshop on Data meets Applied Ontologies in Explainable AI, DAO-XAI 2021, Bratislava, Slovakia, September 18 - 19, 2021]
FOWL - an OWL to FOL translator
Flügel, Simon; Kleinau, Anna; Neuhaus, Fabian; Glauer, Martin; Hastings, Janna
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 2969 (2021), insges. 8 S. [Workshop: 12th International Conference on Biomedical Ontologies, ICBO 2021, Bolzano, Italy, September 11-18, 2021]
Peer-reviewed journal article
Learning chemistry - exploring the suitability of machine learning for the task of structure-based chemical ontology classification
Hastings, Janna; Glauer, Martin; Memariani, Adel; Neuhaus, Fabian; Mossakowski, Till
In: Journal of cheminformatics - London : BioMed Central, Bd. 13 (2021), Artikel 23, insges. 20 S.
Introducing the Open Energy Ontology - enhancing data interpretation and interfacing in energy systems analysis
Booshehri, Meisam; Emele, Lukas; Flügel, Simon; Förster, Hannah; Frey, Johannes; Frey, Ulrich; Glauer, Martin; Hastings, Janna; Hofmann, Christian; Hoyer-Klick, Carsten; Hülk, Ludwig; Kleinau, Anna; Knosala, Kevin; Kotzur, Leander; Kuckertz, Patrick; Mossakowski, Till; Muschner, Christoph; Neuhaus, Fabian; Pehl, Michaja; Robinius, Martin; Sehn, Vera; Stappel, Mirjam
In: Energy and AI - Amsterdam : Elsevier ScienceDirect, Bd. 5 (2021), Artikel 100074, insges. 14 S.
2020
Peer-reviewed journal article
Identification of user requirements for an energy scenario database
Reder, Klara; Stappel, Mirjam; Hofmann, Christian; Förster, Hannah; Emele, Lukas; Hülk, Ludwig; Glauer, Martin
In: International Journal of Sustainable Energy Planning and Management - Aalborg : Univ., Bd. 25 (2020), S. 95-108
Article in conference proceedings
Conversion necessities in climate and energy system modelling
Emele, Lukas; Förster, Hannah; Glauer, Martin; Hofmann, Christian; Huelk, Ludwig; Stappel, Mirjam; Winger, Christian
In: Zenodo - Genève : CERN . - 2020, insges. 20 S.
File formats in climate and energy system modelling
Emele, Lukas; Förster, Hannah; Glauer, Martin; Hofmann, Christian; Huelk, Ludwig; Stappel, Mirjam; Winger, Christian
In: Zenodo - Genève : CERN . - 2020, insges. 13 S.
Book chapter
Free description logic for ontologists
Neuhaus, Fabian; Kutz, Oliver; Righetti, Guendalina
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 2708 (2020), insges. 14 S. [Workshop: 4th Workshop on Foundational Ontologies, virtual, August 31st to October 7th, 2020]
Editor
Formal ontology in information systems - proceedings of the 11th International Conference (FOIS 2020)
Brodaric, Boyan; Neuhaus, Fabian
In: Amsterdam: IOS Press, 2020, 1 Online-Ressource (xiv, 265 Seiten) - (Frontiers in artificial intelligence and applications; volume 330), ISBN: 978-1-64368-129-0 Kongress: Formal Ontology in Information Systems Conference 11 Online 2020.09.14-17
2019
Book chapter
Institutions for SQL database schemas and datasets
Glauer, Martin; Mossakowski, Till
In: Recent Trends in Algebraic Development Techniques , 1st ed. 2019 - Cham : Springer ; Fiadeiro, José Luiz, S. 67-86 - (Lecture Notes in Computer Science; volume 11563) [Workshop: 24th IFIP WG 1.3 International Workshop, WADT 2018, Egham, UK, July 2-5, 2018]
FOUST III - Workshop on Foundational Ontology
Galton, Antony; Borgo, Stefano; Kutz, Oliver; Loebe, Frank; Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 2518 (2019)
Peer-reviewed journal article
Towards fuzzy neural conceptors
Mossakowski, Till; Diaconescu, Razvan; Glauer, Martin
In: Journal of applied logics - IfCoLoG journal of logics and their applications - London : College Publications, Bd. 6 (2019), Heft 4, S. 725-744
2018
Peer-reviewed journal article
Transparency, reproducibility, and quality of energy system analyses - a process to improve scientific work
Hülk, Ludwig; Müller, Berit; Glauer, Martin; Förster, Elisa; Schachler, Birgit
In: Energy strategy reviews - Amsterdam [u.a.] : Elsevier, Bd. 22 (2018), S. 264-269
Book chapter
Image schemas and concept invention
Hedblom, Maria M.; Kutz, Oliver; Neuhaus, Fabian
In: Concept Invention - Cham : Springer International Publishing . - 2018, S. 99-132
Conceptual blending in DOL - evaluating consistency and conflict resolution
Codescu, Mihai; Neuhaus, Fabian; Mossakowski, Till; Kutz, Oliver; Jesús Gómez-Ramírez, Danny
In: Concept Invention - Cham : Springer International Publishing . - 2018, S. 99-132
On the definition of 'Ontology'
Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen, Germany : RWTH Aachen, Bd. 2050 (2018), insges. 10 S. [Workshop: Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, Bozen-Bolzano, Italy, September 21-23, 2017]
Editor
JOWO 2017 - the Joint Ontology Workshops : episode 3: the Tyrolean autumn of ontology : CREOL, DAO, DEW, EPINON, FOMI, FOUST II, ISD3, ODLS, SHAPES 4.0, WINKS : held at Free University of Bozen-Bolzano, September 21, 22, 23, 2017, Bozen-Bolzano, South Tyrol, Italy
Borgo, Stefano; Kutz, Oliver; Loebe, Frank; Neuhaus, Fabian
In: Aachen, Germany: RWTH Aachen, 2018, 1 Online-Ressource - (CEUR workshop proceedings; vol-2050) Kongress: International Workshop on Interaction-Based Knowledge Sharing (WINKS) Bozen-Bolzano, South Tyrol, Italy 2017.09.21-23[Literaturangaben]
Non-peer-reviewed journal article
Modular semantics and characteristics for bipolar weighted argumentation graphs
Mossakowski, Till; Neuhaus, Fabian
In: Arxiv - Ithaca, NY : Cornell University . - 2018
2017
Book chapter
An open database concept for open energy modeling
Glauer, Martin; Stephan, Günther; Ludwig, Huelk; Wolf-Dieter, Bunke
In: EnviroInfo 2017 , 2017 - Aachen : Shaker Verlag, S. 191 [Konferenz: 31st EnviroInfo 2017, Luxembourg, September 13th15th, 2017]
Between contact and support - introducing a logic for image schemas and directed movement
Hedblom, Maria M.; Kutz, Oliver; Mossakowski, Till; Neuhaus, Fabian
In: AI*IA 2017 Advances in Artificial Intelligence - Cham : Springer, S. 256-268 - (Lecture Notes in Computer Science; 10640) [Konferenz: 16th International Conference of the Italian Association for Artificial Intelligence, AI*IA 2017, Bari, Italy, November 14-17, 2017]
Web-retrieval supported argument space exploration
Thiel, Marcus; Ludwig, Philipp; Mossakowski, Till; Neuhaus, Fabian; Nürnberger, Andreas
In: Proceedings of the 2017 Conference on Conference Human Information Interaction and Retrieval - New York, NY : ACM, Association for Computing Machinery, S. 309-312 [Kongress: 2017 Conference on Conference Human Information Interaction and Retrieval : Oslo, Norway, March 07 - 11, 2017]
Article in conference proceedings
Institutions for database schemas and datasets
Glauer, Martin; Mossakowski, Till
In: CALCO Early Ideas 2017$a satellite workshop of CALCO 2017 - Ljubljana - 2017, S. 6:1-6:3 [Workshop: CALCO Early Ideas 2017, Ljubljana, 14-16 June 2017]
Peer-reviewed journal article
Ontohub - a semantic repository engine for heterogeneous ontologies
Codescu, Mihai; Kuksa, Eugen; Kutz, Oliver; Mossakowski, Till; Neuhaus, Fabian
In: Applied ontology - Amsterdam : IOS Press, Bd. 12 (2017), Heft 3/4, S. 275-298
2015
Book chapter
An institution for simple UML state machines
Knapp, Alexander; Mossakowski, Till; Roggenbach, Markus; Glauer, Martin
In: Fundamental Approaches to Software Engineering / Egyed , Alexander - Berlin, Heidelberg : Springer . - 2015, S. 3-18 - (Lecture Notes in Computer Science; 9033) Kongress: FASE 18 London, UK 2015.04.11-18
Towards online detection of neural assemblies in parallel spike trains
Braune, Christian; Glauer, Martin; Kruse, Rudolf
In: 48th Hawaii International Conference on System Sciences (HICSS), 2015 - Piscataway, NJ : IEEE, S. 1503-1511
E pluribus unum - formalisation, use-cases, and computational support for conceptual blending
Kutz, Oliver; Bateman, John; Mossakowski, Till; Neuhaus, Fabian; Bhatt, Mehul
In: Computational Creativity Research: Towards Creative Machines - Paris : Atlantis Press ; Besold, Tarek R. . - 2015, S. 167-196 - (Atlantis Thinking Machines; 7)
On the cognitive and logical role of image schemas in computational conceptual blending
Hedblom, Maria M.; Kutz, Oliver; Neuhaus, Fabian
In: CEUR workshop proceedings - Aachen : RWTH, Bd. 1315 (2015), S. 110-121
The distributed ontology, modeling, and specification language - DOL
Mossakowski, Till; Codescu, Mihai; Neuhaus, Fabian; Kutz, Oliver
In: The Road to Universal Logic - Cham : Birkhäuser . - 2015, S. 489-520
Peer-reviewed journal article
Choosing the right path - image schema theory as a foundation for concept invention
Hedblom, Maria M.; Kutz, Oliver; Neuhaus, Fabian
In: Journal of artificial general intelligence - [S.l.] : de Gruyter, Bd. 6 (2015), Heft 1, S. 21-54
Article in conference proceedings
Image schemas as families of theories
Hedblom, Maria M.; Kutz, Oliver; Neuhaus, Fabian
In: Computational Creativity, Concept Invention, and General Intelligence - Osnabrück : Inst. of Cognitive Science . - 2015
Blending in the hub - towards a collaborative concept invention platform
Kutz, Oliver; Mossakowski, Till; Neuhaus, Fabian; Codescu, Mihai
In: Proceedings of the Fifth International Conference on Computational Creativity, ICCC-2014, June 10-13, 2014, Ljubljana, Slovenia , 2014 - Ljubljana, Slovenia : Jožef Stefan Institute, insges. 9 S. Kongress: International Conference on Computational Creativity 5 Ljubljana, Slovenia 2014.06.09-13
2016
Book chapter
Ontology patterns with DOWL - the case of blending
Kutz, Oliver; Neuhaus, Fabian; Hedblom, Maria M.; Mossakowski, Till; Codescu, Mihai
In: CEUR workshop proceedings - Aachen : RWTH, Bd. 1577 (2016), insges. 13 S. [Kongress: 29th International Workshop on Description Logics, DL 2016, Cape Town, South Africa, April 22-25, 2016]
Peer-reviewed journal article
Image schemas in computational conceptual blending
Hedblom, Maria M.; Kutz, Oliver; Neuhaus, Fabian
In: Cognitive systems research - Amsterdam [u.a.] : Elsevier Science, Bd. 39 (2016), S. 42-57
Editor
JOWO 2016 - the Joint Ontology Workshops : episode 2 - the French summer : CAOS, Onto.Com, NSWO, WOMoCoE, Ontology Competition, Demos, Early Career Symposium : held at the 9th International Conference on Formal Ontology in Information Systems - FOIS 2016 : July 6-9, 2016, Annecy, France
Kutz, Oliver; Cesare, Sergio; Hedblom, Maria M.; Besold, Tarek Richard; Veale, Tony; Gailly, Frederik; Guizzardi, Giancarlo; Lycett, Mark; Partridge, Chris; Pastor, Oscar; Grüninger, Michael; Neuhaus, Fabian; Mossakowski, Till; Borgo, Stefano; Bozzato, Loris; Chiara, Vescovo; Homola, Martin; Loebe, Frank; Barton, Adrien; Bourguet, Jean-Rémi
In: Aachen: RWTH Aachen, 2016, 1 Online-Ressource - (CEUR workshop proceedings; vol-1660) Kongress: International Conference on Formal Ontology in Information Systems (FOIS) 9 Annecy 2016.07.06-09[Literaturangaben]
Non-peer-reviewed journal article
Bipolar weighted argumentation graphs
Mossakowski, Till; Neuhaus, Fabian
In: Arxiv - Ithaca, NY : Cornell University . - 2016, insges. 22 S.
2014
Article in conference proceedings
Fabricating monsters is hard - towards the automation of conceptual blending
Neuhaus, Fabian; Kutz, Oliver; Codescu, Mihai; Mossakowski, Till
In: Computational Creativity, Concept Invention, and General Intelligence: 3rd International Workshop, C3GI ECAI 2014, Prague, Czech Republic, August 19, 2014 ; proceedings - Osnabrück: Inst. of Cognitive Science - (Publication of the Institute of Cognitive Science; 1.2014)Kongress: International Workshop Computational Creativity, Concept Invention, and General Intelligence 3 (Prague : 2014.08.19)